SOAPfusion is a novel tool for fusion discovery with paired-end RNA-Seq reads. The tool follows a different strategy by “finding fusions directly and verifying them”, differentiating it from all other existing tools by “finding the candidate regions and searching for the fusions afterwards”. This enables the fusion discovery process to be more effective and sensitive, also with a specular performance under low coverage of sequencing far more better than other tools.http://soap.genomics.org.cn/SOAPfusion.html