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資源導航

  • 資源導航
  • MiRNA
1. MiRDeep
Discovering known and novel miRNAs from deep sequencing data
標簽：MiRNA
2. CLCbio Genomics Workbench
De novo and reference assembly SNP and small indel detection and annotation.
標簽：Genomics,?Whole Genome Resequencing,?De-novo assembly,?SNP discovery,?InDel discovery,?ChIP-Seq,?RNA-Seq,MiRNA,?Transcriptomics
3. MiRanalyzer
Web-server for identifying and analyzing miRNA in next-gen sequencing experiments
標簽：MiRNA
4. CleaveLand
A pipeline for using degradome data to find cleaved small RNA targets.
標簽：MiRNA
5. Novocraft
Novoalign is a program for mapping short reads from the Illumina/SOLiD sequencing platform(s) to a reference genome. Package for aligning short reads to reference genomes
標簽：Genomics,?Whole Genome Resequencing,?RNA-Seq Alignment,?ChIP-Seq,?MiRNA
6. SeqBuster
SeqBuster, a web-based bioinformatic tool offering a custom analysis of deep sequencing data at different levels, with special emphasis on the analysis of miRNA variants or isomiRs and the discovering of new small RNAs.
標簽：Small RNA transcriptome,?MiRNA
7. MirTools
Web server for microRNA profiling and discovery based on high-throughput sequencing
標簽：Small RNA transcriptome,?MiRNA
8. E-miR
Perl tools for processing miRNA sequencing data
標簽：Small RNA transcriptome,?MiRNA
9. DSAP
Automated multiple-task web service designed to provide a total solution to analyzing deep-sequencing small RNA datasets generated by next-generation sequencing technology
標簽：Small RNA transcriptome,?MiRNA
10. MiRNAkey
A software pipeline for the analysis of microRNA Deep Sequencing data
標簽：MiRNA
11. Chipster
User-friendly NGS data analysis software with built-in genome browser and workflow functionality. Chipster includes tools for ChIP-seq, RNA-seq, miRNA-seq and MeDIP-seq analysis, and functionality for exome-seq and CGH-seq will soon be added.
標簽：ChIP-Seq,?RNA-Seq,?MiRNA-Seq,MeDIP-Seq
12. QSeq
QSeq is DNASTAR's Next-Gen application for RNA-Seq,ChIP-Seq, and miRNA alignment and analysis.
標簽：ChIP-Seq,?RNA-Seq,?MiRNA