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資源導航

  • 資源導航
  • ChIP-on-chip
1. CisGenome
An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis
標簽：ChIP-Seq,?ChIP-on-chip,?Motif analysis,?Gene annotation retrieval
2. ChromaSig
An unsupervised learning method, which finds, in an unbiased fashion, commonly occurring chromatin signatures in both tiling microarray and sequencing data.
標簽：ChIP-on-chip
3. Cistrome
Galaxy-based web service for analysis of ChIP data
標簽：ChIP-on-chip,?ChIP-Seq
4. CARPET
A web‐based package for the analysis of ChIP‐chip and expression tiling data
標簽：ChIP-on-chip
5. Repitools
Toolbox of procedures to interrogate and visualize epigenomic data. Part of BioConductor
標簽：ChIP-Seq,?ChIP-on-chip
6. NucleR
nucleR is a R/Bioconductor package for working with tiling arrays and next generation sequencing. It uses a novel aproach in this field which comprises a deep profile cleaning using Fourier Transform and peak scoring for a quick and flexible nucleosome calling
標簽：ChIP-on-chip,?ChIP-Seq,Nucleosome Positioning,Epigenomics
7. CATCH
A tool for exploring patterns in ChIP profiling data.
標簽：ChIP-Seq,?ChIP-on-chip
8. ChIPmeta
Combining data from ChIP-seq and ChIP-chip.
標簽：Transcription Factor Binding Site identification,?ChIP-Seq,ChIP-on-chip
9. MochiView
Hybrid genome browser and motif visualization/analysis/management desktop software.
標簽：Genomics,?ChIP-Seq,?ChIP-on-chip,?RNA-Seq,?Motif analysis