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資源導航

  • 資源導航
  • ChIP-Seq
41. Diffreps
diffReps is developed to find different peaks in ChIP-seq. It scans the whole genome using a sliding window, performing millions of statistical tests and report the significant hits. diffReps takes into account the biological variations within a group of samples and uses that informatio...
標簽：ChIP-Seq
42. ChIPseqR
ChIP-seq qanalysis tool
標簽：ChIP-Seq
43. SeqSite
SeqSite is an efficient and easy-to-use software tool implementing a novel method for identifying and pinpointing transcription factor binding sites. It first detects transcription factor binding regions by clustering tags and statistical hypothesis testing, and locates every binding si...
標簽：ChIP-Seq
44. Partek Genomics Suite
Easy to use software providing A to Z analysis for all Next Generation Sequencing and Microarray data.
標簽：Allele-specific transcription,RNA-Seq Quantitation,Epigenomics,?Functional Genomics,?ChIP-Seq,Alternative Splicing,?SNP discovery,?Small RNA transcriptome
45. ChIP-Seq (application)
The ChIP-Seq web server provides access to a set of useful tools performing common ChIP-Seq data analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. It is an open system designed to allow interopera...
標簽：ChIP-Seq
46. Avadis NGS
Strand NGS formerly Avadis NGS is a desktop software platform for alignment, analysis, visualization, and management of data generated by next-generation sequencing (NGS) platforms. It supports workflows for RNA-Seq, DNA-Seq, small RNA-Seq, ChIP-Seq, and Methyl-Seq data analysis. Strand...
標簽：ChIP-Seq,?DNA-Seq,?RNA-Seq,Small RNA,?Methyl-Seq,?Pathway analysis
47. CATCH
A tool for exploring patterns in ChIP profiling data.
標簽：ChIP-Seq,?ChIP-on-chip
48. SPP
R-scripts for ChIP-seq analysis.
標簽：Genomics,?ChIP-Seq
49. Genomatix Mining Station (GMS)
The Genomatix Mining Station (GMS) offers mapping of NGS reads onto genomes, transcriptomes and splice-junction libraries. It is a client-server based solution and can be controlled through an intuitive GUI or via command-line. It covers different tasks such as, as genomic positioning, ...
標簽：RNA-Seq,?SNP discovery,?ChIP-Seq
50. DeepTools
User-friendly tools for the normalization and visualization of deep-sequencing data.
標簽：Genomics,?ChIP-Seq
51. Samscope
Samscope is a lightweight SAM/BAM file viewer that makes visually exploring next generation sequencing data as intuitive as Google Maps. Samscope uses multiple layers to simultaneously (or sequentially) view SAM/BAM related features like coverage or allele frequency, or ChIP-SEQ feature...
標簽：ChIP-Seq,?RNA-Seq,?Genomics
52. ChIPmeta
Combining data from ChIP-seq and ChIP-chip.
標簽：Transcription Factor Binding Site identification,?ChIP-Seq,ChIP-on-chip
53. GenoMiner
A proprietary NGS analysis solution. Powerful hardware comes with preinstalled software, organized in workflows.
標簽：Reference assembly,?De-novo assembly,?ChIP-Seq,?RNA-Seq
54. MochiView
Hybrid genome browser and motif visualization/analysis/management desktop software.
標簽：Genomics,?ChIP-Seq,?ChIP-on-chip,?RNA-Seq,?Motif analysis
55. NarrowPeaks
Analysis of variation in ChIP-seq using functional PCA
標簽：ChIP-Seq
56. PeakSeq
標簽：ChIP-Seq
57. QSeq
QSeq is DNASTAR's Next-Gen application for RNA-Seq,ChIP-Seq, and miRNA alignment and analysis.
標簽：ChIP-Seq,?RNA-Seq,?MiRNA
58. Syapse
Syapse is a platform and application suite for bringing together omics and clinical data.
標簽：Allele-specific transcription,DNA methylation,?DNA-Seq,InDel discovery,?SNP discovery,?Structural variation,?RNA-Seq,?Small RNA transcriptome,?ChIP-Seq,Comparative genomics,Comparative transcriptomics,Epigenomics,?Genomics,Personal genomics,?Population ge